Trait Data and Analysis for ENSMUSG00000032303

Cholinergic receptor, nicotinic, alpha polypeptide 3

Details and Links

Group Mouse: LGSM-AI group
Tissue Striatum mRNA
Gene Symbol Chrna3
Aliases Wikidata: BAIPRCK; LNCR2; NACHRA3; PAOD2; (a)3; A730007P14Rik; Acra-3; Acra3
GeneNetwork: (a)3; A730007P14Rik; Acra-3; Acra3; MGC104879
Location Chr 9 @ 55.010354 Mb on the minus strand
Database UCSD AIL Striatum (Apr18) RNA-Seq
Resource Links Gene    OMIM    GeneMANIA    Protein Atlas    Rat Genome DB    GTEx Portal   
UCSC    BioGPS    STRING    PANTHER    Gemma    ABA    EBI GWAS   

Statistics

More about Normal Probability Plots and more about interpreting these plots from the glossary

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Calculate Correlations

Chr:     Mb:  to 
                                   
The Sample Correlation is computed between trait data and any other traits in the sample database selected above. Use Spearman Rank when the sample size is small (<20) or when there are influential outliers.

Mapping Tools

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GEMMA
Maps traits with correction for kinship among samples using a linear mixed model method, and also allows users to fit multiple covariates such as sex, age, treatment, and genetic markers (PMID: 2453419, and GitHub code). GEMMA incorporates the Leave One Chromosome Out (LOCO) method to ensure that the correction for kinship does not remove useful genetic variance near each marker. Markers can be filtered to include only those with minor allele frequencies (MAF) above a threshold. The default MAF is 0.05.

Review and Edit Data

Samples


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