Trait Data and Analysis for ENSG00000182175.9

RGM domain family, member A

Details and Links

Group Human: GTEx group
Tissue Amygdala mRNA
Gene Symbol RGMA
Aliases Wikidata: RGM; BC059072; C230063O06
GeneNetwork: RGM
Location Chr 15 @ 93.586636 Mb on the minus strand
Summary This gene encodes a member of the repulsive guidance molecule family. The encoded protein is a glycosylphosphatidylinositol-anchored glycoprotein that functions as an axon guidance protein in the developing and adult central nervous system. This protein may also function as a tumor suppressor in some cancers. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]
Database GTEx Human Amygdala (Mar14) RPKM Log2
Resource Links Gene    OMIM    GeneMANIA    Protein Atlas    Rat Genome DB    GTEx Portal   
BioGPS    STRING    PANTHER    Gemma    ABA    EBI GWAS   

Statistics

More about Normal Probability Plots and more about interpreting these plots from the glossary

Transform and Filter Data

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Calculate Correlations

Chr:     Mb:  to 
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Mapping Tools

No collections available. Please add traits to a collection to use them as covariates.
GEMMA
Maps traits with correction for kinship among samples using a linear mixed model method, and also allows users to fit multiple covariates such as sex, age, treatment, and genetic markers (PMID: 2453419, and GitHub code). GEMMA incorporates the Leave One Chromosome Out (LOCO) method to ensure that the correction for kinship does not remove useful genetic variance near each marker. Markers can be filtered to include only those with minor allele frequencies (MAF) above a threshold. The default MAF is 0.05.
More information on R/qtl mapping models and methods can be found here.

Review and Edit Data

Show/Hide Columns:


            
  # read into R
  trait <- read.csv("ENSG00000182175.9.csv", header = TRUE, comment.char = "#")

  # read into python
  import pandas as pd
  trait = pd.read_csv("ENSG00000182175.9.csv", header = 0, comment = "#")
            
          

Samples


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